SNP Profiles of UF 12 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
1._UF_12	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
2._UF_12	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
3._UF_12	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
4._GC-05-070-2-21	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
5._GC-05-070-2-21	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
6._GC-05-070-2-21	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
7._GC-05-070-2-21	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
8._GC-05-070-2-21	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
9._UF_12	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
10._UF_12	GG	AT	AC	GT	CT	AC	CG	AG	CT	AT	GG	AG	CC	CT
11._UF_12	GG	AT	AC	GT	CT	CC	GG	GG	CC	AA	GG	AG	AC	CT

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
1._UF_12	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
2._UF_12	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
3._UF_12	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
4._GC-05-070-2-21	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
5._GC-05-070-2-21	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
6._GC-05-070-2-21	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
7._GC-05-070-2-21	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
8._GC-05-070-2-21	GT	CC	AC	CT	GG	GT	CG	CC	TT	GG	AA	CT	AG	CT
9._UF_12	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT
10._UF_12	GT	CC	AC	CT	AG	GT	CG	CC	TT	GG	AA	CT	AG	CT
11._UF_12	GG	GG	AC	CT	AA	GT	CG	CT	CT	CG	AA	TT	AA	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
1._UF_12	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
2._UF_12	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
3._UF_12	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
4._GC-05-070-2-21	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
5._GC-05-070-2-21	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
6._GC-05-070-2-21	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
7._GC-05-070-2-21	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
8._GC-05-070-2-21	AA	AA	CT	CT	GT	CC	AA	TT	CT	CG	AG	CT	X_X	X_X
9._UF_12	AA	AA	CT	CT	GT	CC	AA	TT	CT	GG	AG	CT	X_X	X_X
10._UF_12	AA	AA	TT	CT	GT	CC	AA	TT	CT	GG	AG	CT	X_X	X_X
11._UF_12	GG	AA	CC	CT	GG	TT	AA	CT	TT	CC	AG	CC	X_X	X_X

Input profile: UF_12

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Mars Center for Cocoa Science, Brazil

Location: 5221 1 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

1._UF_12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5221 2 > FP

Dapeng Zhang, 2016

2._UF_12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5221 3 > FP

Dapeng Zhang, 2016

3._UF_12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5221 4 > FP

Dapeng Zhang, 2016

4._UF_12 GC-05-070-2-21

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

5._UF_12 GC-05-070-2-21

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

6._UF_12 GC-05-070-2-21

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP3

7._UF_12 GC-05-070-2-21

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP4

8._UF_12 GC-05-070-2-21

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

9._UF_12

97.5 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F444 T5

Dapeng Zhang, 2016

10._UF_12

96.3 %
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

11._UF_12

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 5221 5

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP32	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP193	7	TcSNP226	8	TcSNP230	9	TcSNP242	10	TcSNP372
11	TcSNP429	12	TcSNP469	13	TcSNP529	14	TcSNP534	15	TcSNP560
16	TcSNP577	17	TcSNP591	18	TcSNP619	19	TcSNP645	20	TcSNP723
21	TcSNP872	22	TcSNP891	23	TcSNP917	24	TcSNP929	25	TcSNP953
26	TcSNP994	27	TcSNP998	28	TcSNP1060	29	TcSNP1062	30	TcSNP1075
31	TcSNP1144	32	TcSNP1165	33	TcSNP1253	34	TcSNP1270	35	TcSNP1350
36	TcSNP1414	37	TcSNP1442	38	TcSNP1458	39	TcSNP1484	40	TcSNP1520